Research Projects

Here you will find my currently running and also past research projects. Feel free to contact me if you want more information or are interesting in collaboration.

07/2020 - 04/2023 | MSMT INTER-COST LTC20033

The SMC5/6 complex in nucleome organization

The goal of this project is to design novel visualization approaches to the visual representation and exploration of chromatin, strongly connected to the understanding of the role of SMC5/6 complex in these structures.

03/2018 - 12/2020 | DFG-GACR GC18-18647J

Visual Analysis of Protein-Ligand Interactions (PROLINT)

Within this project, we are using visual analysis for representing and understanding the interactions between proteins and ligands, with the applications in protein engineering and drug design.

01/2017 - 12/2020 | MVCR VI20172020096

Complex Analysis and Visualization of Large-scale Heterogeneous Data

The project aims to develop a distributed system for comprehensive analysis of big heterogeneous data - in particular, digital artifacts acquired during police investigations.

Past Research Projects

These are the already succesfully finished projects I was participating on.

01/2017 - 12/2019 | GACR GA17-07690S

Methods of Identification and Visualization of Tunnels for Flexible Ligands in Dynamic Proteins (FLigComp)

This project aimed to develop computational and visualization methods for detecting tunnels in proteins, based on motion planning approaches. The proposed methods are operating also on flexible ligands and molecular dynamics simulations of proteins.

03/2016 - 12/2018 | GAMU MUNI/M/0822/2015

Expressive Visualization of Protein Complexes

This project aimed to aid the biochemists with new visualization techniques to enhance the exploration of large ensembles of potential configurations of protein complexes, coming from different computational tools. By several integrated views, mostly very abstracted ones, our proposed COZOID tool supports the drill-down approach to narrowing down the set of biologically relevant configurations that are worth exploring in the 3D view and test in the laboratory.