Work Experience

  • Present 2016

    Senior Researcher

    Masaryk University, Institute of Computer Science

  • Present 2016

    Postdoc Researcher

    University of Vienna, Faculty of Computer Science

  • 2015 2013

    Postdoc Researcher

    Masaryk University, Faculty of Informatics

  • 2013 2006



  • 2011 2006


    Masaryk University, National Centre for Biomolecular Research

Education & Training

  • Ph.D. 2013

    Ph.D. in Informatics

    Masaryk University, Faculty of Informatics

  • M.Sc. 2008

    Mgr. (M.Sc. equivalent) in Applied Informatics

    Masaryk University, Faculty of Informatics

  • B.Sc. 2006

    Bc. (B.Sc. equivalent) in Applied Informatics

    Masaryk University, Faculty of Informatics


  • October 2017
    CaverDock 1.0 has been released
    Our tool for evaluation of ligand's binding or unbinding trajectory with molecular docking has been released. It can be downloaded at The papers describing CaverDock functionality and evaluating it are in preparation.
  • August 2017
    Autotuning of OpenCL/CUDA with global kernel optimization will be presented at ANDARE 2017
    Our paper "Autotuning of OpenCL Kernels with Global Optimizations" has been accepted on ANDARE workshop (part of PACT conference).
  • July 2017
    CaverDock will be presented at ISMB/ECCB 2017
    We are currently finishing CaverDock tool for release. I will present poster focused on basic principles of novel transport method analysis implemented in CaverDock as well as preliminary evaluation of the tool at ISMB/ECCB conference.
  • May 2017
    CERIT-SC HPC Research Groups has been established
    The CERIT-SC Centre is a Czech national centre operating computing and storage infrastructure for research and development. The centre cooperates on many interdisciplinary research projects for a couple of years. There are two newly established research groups in the centre, focusing on High Performance Computing and Big Data. Those research groups will focus on general, but still widely applicable research topics, helping infrastructure and their partners to solve challenging research questions requiring huge amount of computation or non-trivial data analysis.
  • January 2017
    This website has been created
    I have finally found some time to create my personal web-site!