Michal Kozubek

Position and Affiliation

• Professor of Computer Science
  
• Head of Centre for Biomedical Image Analysis
  
  
• Faculty of Informatics, Masaryk University, Brno, Czech Republic

Featured Activities

• New open position for 1 postdoc (deadline Sep 2022)
  
  
• RECENT! Virtual Autumn Course on Advanced Methods in Biomedical Image Analysis (AMBIA) (Brno, Oct-Dec 2020)
• Conference and Exhibition of European Light Microscopy Initiative (ELMI) (Brno, Jun 2019)
  
  
• NEW! Associate editor of a new journal Biological Imaging (Cambridge Univ Press, since Dec 2020)
• Founding member of a new Working group on challenges in biomedical image analysis (MICCAI, since Jun 2018)
  
  
• Invited talk on Benchmarking in Biomedical Image Analysis (IUPESM, Jun 2018)
• Invited talk on Rigorous Bioimage Analysis using Benchmarking (Bioimage Informatics, Sep 2017)
• Invited talk on Synthetic Cell Image Datasets for Benchmarking (NEUBIAS Symposium, Feb 2017)
• Invited talk (record available) on Analysis and Synthesis of Cell Images (Prague Computer Science Seminar, Oct 2016)
  
  
• Tutorial on Benchmarking in Biomedical Image Analysis (MICCAI, Sep 2017)
• Tutorial on Benchmarking in Bioimage Analysis (NEUBIAS Training School, Feb 2017)
• Tutorial on Benchmarking in Biomedical Image Analysis (ISBI, Apr 2016)
  
  
• RECENT! Review and critical analysis of Biomedical Image Analysis Competitions (Nature Communications, Dec 2018)
• Review on Simulations in Cell Imaging (Cytometry, Dec 2016)
• Review on Benchmarking in Bioimage Analysis (Springer, May 2016)
• Review on Morphodynamic Cell Modeling (IEEE SPM, Jan 2015)
  
  
• NEW! Paper on Transparent Reporting of Biomedical Image Analysis Challenges (Medical Image Analysis, Dec 2020)
• Paper on When Deep Learning Meets Cell Image Synthesis (Cytometry, Mar 2020)
• Paper on CytoPacq: A web-interface for simulating multi-dimensional cell imaging (Bioinformatics, Nov 2019)
• TOP! Paper on An Objective Comparison of Cell Tracking Algorithms (Nature Methods, Dec 2017)
  
  
• Networking project Network of European BioImage Analysts (EU COST, since May 2016)
• Networking project Czech-BioImaging (part of Euro-BioImaging, CZ/EU Research Infrastructure, since Jan 2016)
• Networking project Centre of Excellence on Chromosome Structure and Dynamics (Czech Science Foundation, since Jan 2012)
  
  
• NEW! Web resource for benchmarking: 6th ISBI Cell Tracking Challenge (accepted for ISBI, Apr 2021)
• Web resource for benchmarking: Cell Segmentation Benchmark (online mode since Mar 2019)
• Web resource for benchmarking: Cell Tracking Benchmark (online mode since Feb 2017)
• Web resource for benchmarking: MU Cell Image Collection (in one place since Sep 2016)

Academic Profile

• Education
• Academic Stays
• Research Interests
• Research Activities
• Publications
• Full Curriculum Vitae

Personal Profile

• Hobbies

Teaching

• Digital Image Processing
• Image Acquisition Principles
• Other Courses of the Field of Study "Image Processing"

Address

Last updated: January 6, 2021